bigg_models icon indicating copy to clipboard operation
bigg_models copied to clipboard

Published 20 hours ago • verified publisher icon SBRG

Strange Gene Annotation in Recon3D/genes/0

Open matthiaskoenig opened this issue 6 years ago • 5 comments

I am not sure the following gene is correct. It looks like a parsing error, i.e. id "0". http://bigg.ucsd.edu/models/Recon3D/genes/0

matthiaskoenig avatar Feb 27 '18 18:02 matthiaskoenig

This is also the case in the vmh database (see the "Associated human genes"): http://vmh.uni.lu/#reaction/HDCA24Gtr

Thanks for reporting it!

zakandrewking avatar Feb 27 '18 23:02 zakandrewking

Would be great to have a central repository where one could fix these issues and than just simply build RECON3D-v3.02

matthiaskoenig avatar Feb 28 '18 19:02 matthiaskoenig

I don't think this issue is still fixed. I found two genes in the computational model of Recon3 which are not present in the vmh.life database. Genes: "8041.1" and "0"

Saiteja-Reddy avatar Apr 12 '19 07:04 Saiteja-Reddy

@Saiteja-Reddy Yes, it does not instill confidence in the model if after 1 year such basic errors are not fixed.

matthiaskoenig avatar Apr 12 '19 08:04 matthiaskoenig

We've passed this issue on to VMH and they are looking into it.

jmcconn avatar Jul 09 '19 18:07 jmcconn