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RosettaCommons
Central repository for biomolecular foundation models with shared trainers and pipeline components
When running the notebook without it, I get an error. This small addition fixes it. The rest works smoothly
apply_symmetry_to_xyz_atomwise function used in line 361 (new 362) when generating symmetric protein, but not imported
Image models/rfd3/docs/.assets/input_selection.png has a mismatch between the dictionary-type specification and the visual representation.
Hello there, I ran RFD3 and RF3 perfectly fine with the demo and a regular protein. However, RF3 returned a **TypeError("FabricTrainer.init() got an unexpected keyword argument 'cleanup_guideposts'")** when I tried...
Hello, i have a protein complex with chain A and B, want to add 0-20 residues at the beginning of the chain A, i have try two jsons which are...
Hi,I am trying to run the official RFD3 examples demo, I never fix the protein_binder_design.json file, running command: rfd3 design out_dir=inference_outputs/protein_binder/0 ckpt_path=/home/lkbioinfo/.foundry/checkpoints/rfd3_latest.ckpt inputs=./docs/protein_binder_design.json ,but encounter the following Hydra error, How...
Could you provide the SIF file used by Singularity? It's difficult to install on some HPCs. Thank you.
Hello, I’ve encountered an issue with the `rf3` module when it is installed via `pip`. The cli.py tool fails to locate the correct configuration directory, which appears to be due...
- added is_non_loopy=ture to the symmetry examples to match the preprint benchmarks
Add tetrahedral, octahedral, and icosahedral symmetry frames and improved chain ID handling. It works nicely for me :))
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Central repository for biomolecular foundation models with shared trainers and pipeline components