msa and network issues

[adxyzz]

Hello everyone, I need your help, thank you!

1. I met problem when run ../run_e2e_ver.sh input.fa . or ../run_pyrosetta_ver.sh input.fa . , just Running HHblits and be stucked here. I found an empty HHblits folder bulit, a log folder with make_msa.stdeer and make_msa.stdout, and there's nothing in make_msa.stdeer. But if I provide a t000_.msa0.a3m file, it can run PSIPRED and hhsearch.
2. when I provide a t000_.msa0.a3m file, PSIPRED and hhsearch can be run, but there's some thing wrong with network. For e2e, after Running end-to-end precision, Module Not Found Error: No module named 'dgl' were write to network.stderr. For pyrosetta, after Predicting distance and orientations, the same error Module Not Found Error: No module named 'dgl' present. So, how can I do msa automaticly? And I need to install dgl module? If I want to install dgl module, I need to install pytorch， right? Thank you so much. Your answer is very important for me.

[maymoona100]

I was facing the same issue ,after I installed pytorch .but now I face python backend problem and thus the network file is missing as well

[maymoona100]

Hi , I downloaded the e2e shell file again and it dot fixed.May be you can give it a try .

[275145]

I was facing the same issue ,after I installed pytorch .but now I face python backend problem and thus the network file is missing as well

@maymoona100 The python backend problem you mentioned in your message is the one shown by using cat network.stderr (this is my case, besides my main problem is that there is no output of t000_.e2e.pdb file. And the log file is normal except for network.stderr)