AME Benchmark Clarification

Open proteinsRk00l opened this issue 2 months ago • 2 comments

The github currently has the AME benchmark defaulted to an all-atom aligned RMSD here, but the RFDiffusion2 preprint section 3 states that the data in Figure 3B are for backbone aligned RMSD.

Could you please clarify which was used for Figure 3B? Thanks!

Oct 18 '25 20:10 proteinsRk00l

There is a separate repository for RFdifussion2, I would recommend posting questions specifically about RFdiffusion2 there.

For now I've forwarded your question to one of the authors, I'll leave another comment once I get a response.

Oct 21 '25 21:10 rclune

Thanks for passing along the question! I'm terribly sorry for opening in the wrong repository. I've also opened it under RFdiffusion2 and will close this one.

Oct 22 '25 10:10 proteinsRk00l