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No module named 'yaml'

Open BiomedicLJZ opened this issue 4 months ago • 0 comments

We have been running a lot of issues trying to develop binders using RFdiffusion

we are currently running this on a cloud machine using Nvidia Brev and a Crusoe machine:

OS: Ubuntu 22.04.4 LTS x86_64 Host: cloud-hypervisor Kernel: 5.15.0-116-generic CPU: AMD EPYC 9254 (8) @ 2.900GHz GPU: NVIDIA 0002:00:01.0 NVIDIA Corporation Device 26b9 is currently an L40s Memory: 927MiB / 147864MiB

Traceback (most recent call last):
  File "/home/ubuntu/RFdiffusion/scripts/run_inference.py", line 21, in <module>
    from omegaconf import OmegaConf
  File "/home/ubuntu/conda/envs/SE3nv/lib/python3.9/site-packages/omegaconf/__init__.py", line 1, in <module>
    from .base import Container, DictKeyType, Node, SCMode, UnionNode
  File "/home/ubuntu/conda/envs/SE3nv/lib/python3.9/site-packages/omegaconf/base.py", line 11, in <module>
    from ._utils import (
  File "/home/ubuntu/conda/envs/SE3nv/lib/python3.9/site-packages/omegaconf/_utils.py", line 24, in <module>
    import yaml
ModuleNotFoundError: No module named 'yaml'

It began with hydra issues that dolved after updating cuda, then moved to this error after performing a conda update -all

BiomedicLJZ avatar Aug 21 '25 20:08 BiomedicLJZ