DeepAb

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When I run score_design.py with my own sequence, I get a score of 0.0

1

As the title describes, when I run this script to score my own sequences, I get a score of 0. Also, I would like to confirm what the wt.fasta file...

404-xianjin

respected sir, what loss value did you obtained while trainning Abresnet and what was the batch size you used for it?

peacesang

Error in google colab

4

Hi! I try to analyse my sequence with google colab, but i have this error. Can you help me? Thank you IndexError Traceback (most recent call last) [](https://localhost:8080/#) in 7...

aaaniich

Training

2

Can I train the model instead of using the pretrained one?

egiovanoudi

Reference vs Expected path?

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Downloaded the tar wheel and ran`sudo python setup.py install` and get the following? ``` >>> import pyrosetta Traceback (most recent call last): File "", line 1, in File "/opt/anaconda3/envs/trimmer_lab/lib/python3.8/site-packages/pyrosetta/__init__.py", line...

keithgmitchell

error while trying to predict the structure

5

i have a sequence of an antibody with a linker of GGGGSGGGGSGGGGS. i added divided the sequence into the heavy and light chains and tried to predict the structure however...

hima111997

no decoys created

2

The message "Creating decoys structures" stays for too long and no decoy is created, nothing happens after this message. Do you have a clue what can be going on? Thank...

carusobpaula

Hi! I'm wondering if there's a way to predict ~100 mAb structures using the Google Colab for DeepAb? Without having to load them one by one and wait. Is it...

memumab

The sample files I only found after my initial attempt to work directly with the files I had prepared in the past for ROSIE and then looked into the source...

smoe

lyskov