PlanetarySystemStacker
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Rolf-Hempel
PIP Installer not working
Hello, I tried to install PSS on my linux observatory PC. It fails completely, please fix it. Do you need certain logs? Thomas
remote@shuttle:~$ python3 --version
**Python 3.8.10**
remote@shuttle:~$ **pip3 install planetary-system-stacker**
Collecting planetary-system-stacker
Using cached planetary_system_stacker-0.9.8.2-py3-none-manylinux1_x86_64.whl (232 kB)
Collecting scikit-image
Downloading scikit_image-0.21.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.9 MB)
|████████████████████████████████| 13.9 MB 925 kB/s
Collecting numpy<1.23.0
Downloading numpy-1.22.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.9 MB)
|████████████████████████████████| 16.9 MB 299 kB/s
Collecting astropy
Downloading astropy-5.2.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (11.4 MB)
|████████████████████████████████| 11.4 MB 1.3 MB/s
Collecting matplotlib
Downloading matplotlib-3.7.4-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (9.2 MB)
|████████████████████████████████| 9.2 MB 716 kB/s
Requirement already satisfied: psutil in /usr/lib/python3/dist-packages (from planetary-system-stacker) (5.5.1)
Collecting PyQt5>=5.15
Using cached PyQt5-5.15.10.tar.gz (3.2 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 /tmp/tmp3mpg_8v7 prepare_metadata_for_build_wheel /tmp/tmpxnpxbs5v
cwd: /tmp/pip-install-uw4v8ran/PyQt5
Complete output (32 lines):
pyproject.toml: line 7: using '[tool.sip.metadata]' to specify the project metadata is deprecated and will be removed in SIP v7.0.0, use '[project]' instead
Traceback (most recent call last):
File "/tmp/tmp3mpg_8v7", line 126, in prepare_metadata_for_build_wheel
hook = backend.prepare_metadata_for_build_wheel
AttributeError: module 'sipbuild.api' has no attribute 'prepare_metadata_for_build_wheel'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/tmp/tmp3mpg_8v7", line 280, in <module>
main()
File "/tmp/tmp3mpg_8v7", line 263, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/tmp/tmp3mpg_8v7", line 130, in prepare_metadata_for_build_wheel
return _get_wheel_metadata_from_wheel(backend, metadata_directory,
File "/tmp/tmp3mpg_8v7", line 159, in _get_wheel_metadata_from_wheel
whl_basename = backend.build_wheel(metadata_directory, config_settings)
File "/tmp/pip-build-env-fnnrkj24/overlay/lib/python3.8/site-packages/sipbuild/api.py", line 46, in build_wheel
project = AbstractProject.bootstrap('wheel',
File "/tmp/pip-build-env-fnnrkj24/overlay/lib/python3.8/site-packages/sipbuild/abstract_project.py", line 92, in bootstrap
project.setup(pyproject, tool, tool_description)
File "/tmp/pip-build-env-fnnrkj24/overlay/lib/python3.8/site-packages/sipbuild/project.py", line 587, in setup
self.apply_user_defaults(tool)
File "/tmp/pip-install-uw4v8ran/PyQt5/project.py", line 68, in apply_user_defaults
super().apply_user_defaults(tool)
File "/tmp/pip-build-env-fnnrkj24/overlay/lib/python3.8/site-packages/pyqtbuild/project.py", line 70, in apply_user_defaults
super().apply_user_defaults(tool)
File "/tmp/pip-build-env-fnnrkj24/overlay/lib/python3.8/site-packages/sipbuild/project.py", line 237, in apply_user_defaults
self.builder.apply_user_defaults(tool)
File "/tmp/pip-build-env-fnnrkj24/overlay/lib/python3.8/site-packages/pyqtbuild/builder.py", line 69, in apply_user_defaults
raise PyProjectOptionException('qmake',
sipbuild.pyproject.PyProjectOptionException
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 /tmp/tmp3mpg_8v7 prepare_metadata_for_build_wheel /tmp/tmpxnpxbs5v Check the logs for full command output.
Pip is no longer working on my Fedora system either. In my case AttributeError: module 'pkgutil' has no attribute 'ImpImporter'. Did you mean: 'zipimporter'? is the error message. According to online comments, this is a python 3.12 issue where they deprecated zipImporter but forgot to tell pip. So far I haven't found a work around. I have been trying to install it on windows10 to be able to use it, but the installer for windows 10 is for .83 while the current version is 0.98. Thus there is no route for me to use 0.98 at this time.
here is the error message I get from pip: I particularly enjoy pip absolving itself of any responsibility.
jduchek@HP-K:~$ pip install planetary-system-stacker Defaulting to user installation because normal site-packages is not writeable Collecting planetary-system-stacker Using cached planetary_system_stacker-0.9.8.2-py3-none-manylinux1_x86_64.whl.metadata (5.2 kB) Collecting numpy<1.23.0 (from planetary-system-stacker) Using cached numpy-1.22.4.zip (11.5 MB) Installing build dependencies ... done Getting requirements to build wheel ... error error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [33 lines of output]
Traceback (most recent call last):
File "/home/jduchek/.local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in
note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip. jduchek@HP-K:~$
I see attempts mentioned above were python 3.8 & python 3.12
RE: python 3.12 so far python 3.10 looks like the most current python for a successful PSS install...
the limit seems to be: https://github.com/Rolf-Hempel/PlanetarySystemStacker/issues/71 numpy==1.22.4 whl does not want to build on 3.11 and opencv-python-headless 4.9.0.80 depends on numpy>=1.23.5; python_version >= "3.11" whereas opencv-python-headless 4.9.0.80 depends on numpy>=1.21.2; python_version >= "3.10"
Over at the CloudyNights Forum there is also a thread with current discussion for installation parameters & successes & issues with various environments:
https://www.cloudynights.com/topic/753290-planetarysystemstacker-installation-issues/page-2#entry12887153
Ubuntu 22.04 uses Python 3.10.12...see log below where PSS 0.9.8.2 installs OK via pip in a venv (Ubuntu 22.04 running on wsl2 in Windows 10)
I suggest using a dedicated venv for PSS -- for linux based example:
python3 -m venv ./PSSvenv source ./PSSvenv/bin/activate
pip install -r requirements.txt
using this file: requirements.txt
then
pip install planetary-system-stacker
The above "requirements.txt" which was created from the python 3.10.12 venv via pip freeze > requirements.txt I have used it to install planetary-system-stacker in a venv created with python 3.10.11 (from the windows store in my 2nd test case)
https://github.com/Rolf-Hempel/PlanetarySystemStacker/issues/66
Here are the packages that were pulled & seem to work (click black arrow to reveal drop down text):
Ubuntu 22.04 uses Python 3.10.12 PSS 0.9.8.2 seems to install OK via pip in a venv Ubuntu 22.04 in wsl2 on Windows 10:
growflavor@Alo:~$ python3 --version
Python 3.10.12
growflavor@Alo:~$ python3 -m venv ./PSSvenv
growflavor@Alo:~$ source ./PSSvenv/bin/activate
(PSSvenv) growflavor@Alo:~$ pip install planetary-system-stacker
Collecting planetary-system-stacker
Downloading planetary_system_stacker-0.9.8.2-py3-none-manylinux1_x86_64.whl (232 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 232.4/232.4 KB 2.7 MB/s eta 0:00:00
Collecting psutil
Downloading psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB)
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Collecting astropy
Downloading astropy-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.1 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 5.1 MB/s eta 0:00:00
Collecting scipy
Downloading scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 38.6/38.6 MB 4.9 MB/s eta 0:00:00
Collecting matplotlib
Downloading matplotlib-3.8.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.6/11.6 MB 5.1 MB/s eta 0:00:00
Collecting PyQt5>=5.15
Downloading PyQt5-5.15.10-cp37-abi3-manylinux_2_17_x86_64.whl (8.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.2/8.2 MB 5.3 MB/s eta 0:00:00
Collecting opencv-python-headless
Downloading opencv_python_headless-4.9.0.80-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (49.6 MB)
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Collecting numpy<1.23.0
Downloading numpy-1.22.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
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Collecting scikit-image
Downloading scikit_image-0.23.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.7 MB)
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Collecting PyQt5-sip<13,>=12.13
Downloading PyQt5_sip-12.13.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.whl (338 kB)
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Collecting PyQt5-Qt5>=5.15.2
Downloading PyQt5_Qt5-5.15.2-py3-none-manylinux2014_x86_64.whl (59.9 MB)
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Collecting astropy-iers-data>=0.2024.2.26.0.28.55
Downloading astropy_iers_data-0.2024.4.29.0.28.48-py3-none-any.whl (1.9 MB)
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Collecting PyYAML>=3.13
Downloading PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (705 kB)
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Collecting pyerfa>=2.0.1.1
Downloading pyerfa-2.0.1.4-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
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Collecting packaging>=19.0
Downloading packaging-24.0-py3-none-any.whl (53 kB)
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Collecting fonttools>=4.22.0
Downloading fonttools-4.51.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB)
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Collecting contourpy>=1.0.1
Downloading contourpy-1.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (305 kB)
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Collecting python-dateutil>=2.7
Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
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Collecting pillow>=8
Downloading pillow-10.3.0-cp310-cp310-manylinux_2_28_x86_64.whl (4.5 MB)
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Collecting kiwisolver>=1.3.1
Downloading kiwisolver-1.4.5-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB)
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Collecting cycler>=0.10
Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB)
Collecting pyparsing>=2.3.1
Downloading pyparsing-3.1.2-py3-none-any.whl (103 kB)
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Collecting scikit-image
Downloading scikit_image-0.23.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.7 MB)
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Downloading scikit_image-0.22.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.7 MB)
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Collecting imageio>=2.27
Downloading imageio-2.34.1-py3-none-any.whl (313 kB)
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Collecting networkx>=2.8
Downloading networkx-3.3-py3-none-any.whl (1.7 MB)
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Collecting lazy_loader>=0.3
Downloading lazy_loader-0.4-py3-none-any.whl (12 kB)
Collecting tifffile>=2022.8.12
Downloading tifffile-2024.4.24-py3-none-any.whl (225 kB)
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Collecting six>=1.5
Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: PyQt5-Qt5, six, PyYAML, PyQt5-sip, pyparsing, psutil, pillow, packaging, numpy, networkx, kiwisolver, fonttools, cycler, astropy-iers-data, tifffile, scipy, python-dateutil, PyQt5, pyerfa, opencv-python-headless, lazy_loader, imageio, contourpy, scikit-image, matplotlib, astropy, planetary-system-stacker
Successfully installed PyQt5-5.15.10 PyQt5-Qt5-5.15.2 PyQt5-sip-12.13.0 PyYAML-6.0.1 astropy-6.0.1 astropy-iers-data-0.2024.4.29.0.28.48 contourpy-1.2.1 cycler-0.12.1 fonttools-4.51.0 imageio-2.34.1 kiwisolver-1.4.5lazy_loader-0.4 matplotlib-3.8.4 networkx-3.3 numpy-1.22.4 opencv-python-headless-4.9.0.80 packaging-24.0 pillow-10.3.0 planetary-system-stacker-0.9.8.2 psutil-5.9.8 pyerfa-2.0.1.4 pyparsing-3.1.2 python-dateutil-2.9.0.post0 scikit-image-0.22.0 scipy-1.13.0 six-1.16.0 tifffile-2024.4.24
(PSSvenv) growflavor@Alo:~$ PlanetarySystemStacker
I have been trying to install it on windows10 to be able to use it, but the installer for windows 10 is for .83 while the current version is 0.98.
@Plutonium5793 Fortunately for Windows 10 & Windows 11, 0.9.8 currently pulls successfully in python 3.10 from the windows store & the process is quick & quite easy to do...
Overview: In Windows 10 & 11, we can pull any/all major versions (from 3.7 to 3.12) of Python directly from the "Windows Store" app. Then, with one simple cmd line, we can create a venv for any specific Python version we have installed from the store in ANY folder we make/choose, as follows:
-
On Windows 10 or 11, from the "Windows Store" app search for 'python' & install python 3.10 (currently installs 3.10.11)
-
create a folder for PSS anywhere you want...In my case I chose to simply create & name the new folder PSS on my 'faster' workspace SSD X:
-
(see image below as example): Enter the folder you created from Windows Explorer & place your mouse cursor over any 'white space' in that folder and hold down the SHIFT key while you click the right mouse button...from the menu that opens select 'Open Command Prompt' (or PowerShell or Terminal) to open a terminal in that folder...Command Prompt is easiest...so if only PowerShell is an option then open that and then once you are in PowerShell type cmd to get the Windows Command Prompt.
note: you can name the python venv whatever you want, I just chose 'pssvenv' to be descriptive in my case...
In either command prompt or PowerShell (PS) enter the following commands shown in bold text :
PS X:\Workspace\PSS> python3.10 -m venv pssvenv
--> ignore the next step if you are already in Windows Command prompt rather than PowerShell: PS X:\Workspace\PSS> cmd
X:\zFASTworkspace\PSS> pssvenv\scripts\activate (pssvenv) X:\zFASTworkspace\PSS> pssvenv\Scripts\python.exe -m pip install --upgrade pip (pssvenv) X:\zFASTworkspace\PSS> pip install planetary-system-stacker
Windows 10 or 11 creating Python 3.10 venv & installing PlanetarySystemStacker from PowerShell/cmd (click black arrow to show the drop down with example install log text)
If you are already in windows command prompt, ignore the line that executes 'cmd'
PS X:\zFASTworkspace\PSS> python3.10 -m venv pssvenv
PS X:\zFASTworkspace\PSS> cmd
Microsoft Windows [Version 10.0.19045.4291]
(c) Microsoft Corporation. All rights reserved.
X:\zFASTworkspace\PSS>pssvenv\scripts\activate
(pssvenv) X:\zFASTworkspace\PSS>pssvenv\Scripts\python.exe -m pip install --upgrade pip
Requirement already satisfied: pip in x:\zfastworkspace\pss\pssvenv\lib\site-packages (23.0.1)
Collecting pip
Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 23.0.1
Uninstalling pip-23.0.1:
Successfully uninstalled pip-23.0.1
Successfully installed pip-24.0
(pssvenv) X:\zFASTworkspace\PSS>pip3 install planetary-system-stacker
Collecting planetary-system-stacker
Downloading planetary_system_stacker-0.9.8.1-py3-none-win_amd64.whl.metadata (5.2 kB)
Requirement already satisfied: numpy<1.23.0 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from planetary-system-stacker) (1.22.4)
Requirement already satisfied: matplotlib in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from planetary-system-stacker) (3.8.4)
Requirement already satisfied: psutil in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from planetary-system-stacker) (5.9.8)
Requirement already satisfied: PyQt5 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from planetary-system-stacker) (5.15.10)
Requirement already satisfied: scipy in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from planetary-system-stacker) (1.13.0)
Requirement already satisfied: astropy in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from planetary-system-stacker) (6.0.1)
Requirement already satisfied: scikit-image in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from planetary-system-stacker) (0.22.0)
Collecting opencv-python (from planetary-system-stacker)
Downloading opencv_python-4.9.0.80-cp37-abi3-win_amd64.whl.metadata (20 kB)
Requirement already satisfied: pyerfa>=2.0.1.1 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from astropy->planetary-system-stacker) (2.0.1.4)
Requirement already satisfied: astropy-iers-data>=0.2024.2.26.0.28.55 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from astropy->planetary-system-stacker) (0.2024.4.29.0.28.48)
Requirement already satisfied: PyYAML>=3.13 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from astropy->planetary-system-stacker) (6.0.1)
Requirement already satisfied: packaging>=19.0 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from astropy->planetary-system-stacker) (24.0)
Requirement already satisfied: contourpy>=1.0.1 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from matplotlib->planetary-system-stacker) (1.2.1)
Requirement already satisfied: cycler>=0.10 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from matplotlib->planetary-system-stacker) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from matplotlib->planetary-system-stacker) (4.51.0)
Requirement already satisfied: kiwisolver>=1.3.1 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from matplotlib->planetary-system-stacker) (1.4.5)
Requirement already satisfied: pillow>=8 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from matplotlib->planetary-system-stacker) (10.3.0)
Requirement already satisfied: pyparsing>=2.3.1 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from matplotlib->planetary-system-stacker) (3.1.2)
Requirement already satisfied: python-dateutil>=2.7 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from matplotlib->planetary-system-stacker) (2.9.0.post0)
Requirement already satisfied: PyQt5-sip<13,>=12.13 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from PyQt5->planetary-system-stacker) (12.13.0)
Requirement already satisfied: PyQt5-Qt5>=5.15.2 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from PyQt5->planetary-system-stacker) (5.15.2)
Requirement already satisfied: networkx>=2.8 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from scikit-image->planetary-system-stacker) (3.3)
Requirement already satisfied: imageio>=2.27 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from scikit-image->planetary-system-stacker) (2.34.1)
Requirement already satisfied: tifffile>=2022.8.12 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from scikit-image->planetary-system-stacker) (2024.4.24)
Requirement already satisfied: lazy_loader>=0.3 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from scikit-image->planetary-system-stacker) (0.4)
Requirement already satisfied: six>=1.5 in x:\zfastworkspace\pss\pssvenv\lib\site-packages (from python-dateutil>=2.7->matplotlib->planetary-system-stacker) (1.16.0)
Downloading planetary_system_stacker-0.9.8.1-py3-none-win_amd64.whl (232 kB)
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Downloading opencv_python-4.9.0.80-cp37-abi3-win_amd64.whl (38.6 MB)
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Installing collected packages: opencv-python, planetary-system-stacker
Successfully installed opencv-python-4.9.0.80 planetary-system-stacker-0.9.8.1
(pssvenv) X:\zFASTworkspace\PSS>PlanetarySystemStacker
To run PSS: (pssvenv) X:\zFASTworkspace\PSS> PlanetarySystemStacker
To exit the venv: (pssvenv) X:\zFASTworkspace\PSS> deactivate
To exit cmd: X:\zFASTworkspace\PSS> exit
To exit Poweshell: PS X:\Workspace\PSS> exit
To launch PSS in the future, repeat SHIFT-right click to open a cmd terminal in your PSS folder, then
X:\zFASTworkspace\PSS> pssvenv\scripts\activate (pssvenv) X:\zFASTworkspace\PSS> PlanetarySystemStacker
For anyone new to working with Python on any platform, venv are very important for reducing headaches from python 'package conflicts'...here is one useful reference/discussion/tutorial to read regarding the 'best practice why' & 'how' to use python venv virtual environments:
https://www.dataquest.io/blog/a-complete-guide-to-python-virtual-environments/
Hi,
I am getting the following error when running PIP installer.
ERROR: Could not find a version that satisfies the requirement planetary-system-stacker (from versions: none) ERROR: No matching distribution found for planetary-system-stacker
Mac OS 14.6.1
Any ideas?
Thanks
