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Provide explanation of eDNA minion data

1

What are we expecting to see in this data. eg Are there barcodes? It appears to be a 1 GB fasta file (which is a bit odd as fasta does...

sr320

This is a priority to get done this week.

sr320

Ending Amazon backup?

5

Does it make sense to continue Amazon back up - is backup in this manner needed? is there a better UW solution? eg lolo

sr320

Annotate Ostrea lurida genes involved in reproduction

1

Take the transcriptome and fully annotate gene associated with reproduction

sr320

Idea from lab meeting today to explore a means by which to create Quarto notebook posts in individual project GitHub repos and then pull those posts into a Quarto website...

kubu4

Compare top marker genes in oyster and geoduck scRNAseq data

6

sr320

ID kynurenine pathway in C gigas

1

Based on NCBI transcripts in this snail paper : https://d.pr/f/lz7GRE see if homologs are present in C. gigas. Should just be able to create multi-fasta and blast. Do add link...

sr320

Perform Copy Number Variation analysis on C gigas samples

27

for @ggoetznoaa / @mgavery can advise TLDR: [Nightingales Folder](http://owl.fish.washington.edu/nightingales/C_gigas/) - F05/F14 prefix

sr320

Add Pycnopodia to genomic resources

2

sr320

Step 1 identify data Step 2 run Bismark Step 2 run Methylkit

sr320