Run RNAseq and BS pipelines on P meandrina

[sr320]

seq reads:

https://github.com/urol-e5/timeseries_molecular/wiki/01%E2%80%90Sequencing-Read-Data#p-meandrina

genomic resources:

https://github.com/urol-e5/timeseries_molecular/wiki/00%E2%80%90Genomic%E2%80%90Resources#genomic-resources-from-other-pocillopora-species

[sr320]

repo - https://github.com/urol-e5/timeseries_molecular

[shellywanamaker]

RNAseq

• mutliqc: https://gannet.fish.washington.edu/metacarcinus/E5/Ptuahiniensis/20250421_RNAseq/multiqc/multiqc_report.html
• RNAseq output and counts matrices: https://gannet.fish.washington.edu/metacarcinus/E5/Ptuahiniensis/20250421_RNAseq/

EM-seq

• multiqc: https://gannet.fish.washington.edu/metacarcinus/E5/Ptuahiniensis/20250422_methylseq/multiqc/bismark/multiqc_report.html
• Methylseq output and counts matrices: https://gannet.fish.washington.edu/metacarcinus/E5/Ptuahiniensis/20250422_methylseq/

notebook post: https://shellywanamaker.github.io/400th-post/

[sr320]

can you add to github repo?

[shellywanamaker]

[sr320]

just sent invite you will need to accept

[shellywanamaker]

code added:

• RNAseq: 02.21-F-Ptua-RNAseq-alignment-STAR-salmon.md
• Methylseq: https://github.com/urol-e5/timeseries_molecular/blob/main/F-Ptua/code/02.22-F-Ptua-EMseq-alignment-Bismark.md