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soma object has no attribute 'pad'
Hello, I am tracing a neuron with a clear soma but I get this :
python ./apps/rtrace -f testlila4.tif -t 25 -z 0.5 --soma --save-soma
The shape of the image is (926, 742, 212)
-- Zooming image to 0.50 of original size
(1) -- Detecting Soma...Reconstructing Soma with Simple Mask
(2) --Boundary DT...
(3) --Fast Marching with low quality...
(4) --Compute Gradients...
(5) --Start Backtracking with standard stopping criteria ...
36888.0it [15:03, 24.15it/s] Traceback (most recent call last):
File "./apps/rtrace", line 147, in
Also when I try to use --view option I get this:
The shape of the image is (926, 742, 212)
-- Zooming image to 0.50 of original size
(1) -- Detecting Soma...Reconstructing Soma with Simple Mask
(2) --Boundary DT...
(3) --Fast Marching with low quality...
(4) --Compute Gradients...
(5) --Start Backtracking with standard stopping criteria ...
26445.0it [09:24, 21.93it/s] -- Finshed: 687.66 sec.
Traceback (most recent call last):
File "./apps/rtrace", line 173, in
Do you have any recommendation about how to solve these issues?
Thanks,
Ali