Richard Corbett

help interpreting output

7

Hi Kevin, I was looking at some GIAB data this morning and found the link to your tool. I gave it a whirl with this command: `vgraph repmatch --include-regions GIAB/HG001_GRCh37_GIAB_highconf_CG-IllFB-IllGATKHC-Ion-10X-SOLID_CHROM1-X_v.3.3.2_highconf_nosomaticdel.bed...

Hi folks, is it possible to analyze methyl-capture data with gembs? If so are there any specific parameters you would recommend tuning? thanks RIchard

Q: Are 2.1.2.1 or 2.1.1.20160309 results better? Some differences noted

1

Hi folks, We had trouble processing some data with 2.1.1.20160309 so we ran instead with 2.1.2.1. In another test we are seeing what look like significant differences in results between...

HI folks, I am going to try learning some DSL2 (I'm been using base nextflow and loving it). To follow the instructions in this tutorial I had to convert the...

clinSV singularity issues

5

Hi folks, We want to use clinSV with hg38 bams and we found that we should use the container for this reference. We don't have permission to run docker in...