Richard Bruskiewich

Results 32 issues of Richard Bruskiewich

Rumour has it that this subtree of predicates should no longer be of type `mixin`? Howeve,r several of these child subclasses are `deprecated: true` now so perhaps this is a...

working-group/predicates
deprecation
v3.0.4

Add a new slot for **`mixins`** that distinguish between "important" user **`mixins`** (like 'treats') and purely internal **`mixins`** that simply facilitate sharing of model 'bits' (like shared slots).

There are a number of existing slots/mixins/classes relating to - broadly speaking - phenotypic frequency. Recent discussions suggest room for improvement in their definition, structure and relationships. This issue is...

enhancement
translator-monarch-discussion

Certain [Biolink Model parameters in kgx_utils](https://github.com/biolink/kgx/blob/master/kgx/utils/kgx_utils.py#L44) are hard coded. Given the ongoing evolution of the Biolink Model (and Biolink Model Toolkit support), should such parameters be read directly in from...

enhancement

Motivating issue is briefly documented in https://github.com/NCATSTranslator/reasoner-validator/issues/93. See also [the related Biolink Model issue](https://github.com/biolink/biolink-model/issues/1379). **What working group (or team) did this request originate from?** Aragorn KP (Max Wang) **Solution we'd...

It may be helpful that the endpoints themselves be systematically tagged in their Markdown documentation with respect to the specific version of the BrAPI specification within which they were introduced....

Modify Documentation

Observed truncation of large files inserted into archive. It seems necessary to flush and seek to the EOF of `source_key_io` to avoid this, see https://github.com/boto/boto3/issues/1304. As this Boto issue indicates,...

STRING download hostname is different from main STRING hostname

The nodes definitions are duplicated in the KGX output files from a Koza `transform` operation. This may not be a show stopper (since later merging of data can perhaps eliminate...