Richard Bruskiewich

Results 24 comments of Richard Bruskiewich

Hi @goodb, As I noted earlier (above) in this issue, I seem to recall that we rehabilitated the error reporting to be somewhat more concise and possibly hierarchical. That said,...

@sierra-moxon this is not a complete duplicate of issue #174 since the other issue's use case is specific to text mining (although the underlying generic implementation will be syntactically the...

@sierra-moxon did we actually get around to updating KGX to read in the `_attributes` blob? I guess the blob is still 'state-of-art' for KGX, except for the fact that some...

Do we have a unit test to check this? @sierra, is the relevant code in https://github.com/biolink/kgx/blob/master/kgx/utils/kgx_utils.py#L831? I'm not sure if this snippet of code avoids duplication in pipe-delimited lists...

I applied a fix of the above snippet of code in the List related PR #415

Sorry, slightly non-sequitur here, but just want to mention that a "Knowledge Beacon" was built to access Rhea. It is still quietly running on the Translator subnet at https://kba.ncats.io/beacon/rhea/. It...

That would be nice @hsolbrig since I just noticed that the context.jsonld file now has two ways of expressing a prefix, e.g. as a string and as an @id, @prefix...

Still a problem 3 years later... See https://github.com/python-poetry/poetry/issues/7094

> Hi @sierra-moxon (cc: @vdancik), You'll note @balhoff's comment today. This is partly triggered from failed SRI Testing unit tests on MolePro, involving 'parent' category traversal via 'subclass_of' relationships in...

Within Translator, not quite sure what chemical entities are mapped onto **`biolink:SmallMolecule`**. I heard a rumour that we consider atoms and ions as being mapped on that category, which I...