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Where can I find ppi and enron dataset?

Open lcgsglance opened this issue 5 years ago • 5 comments

Describe the bug hi-union-ppi.tsv and enron_slice_0.pkl are not found.

And when I use --bmname=[REDDIT-BINARY/Mutagenicity/Tox21_AHR],nothing happened,no ckpt exitsted.Where should I put these three datasets when they were downloaded manually.

Platform

  • OS: [e.g. Windows]
  • Python [e.g. 3.7]
  • Version [e.g. latest]

lcgsglance avatar Jan 02 '20 02:01 lcgsglance

The REDDIT-BINARY/Mutagenicity/Tox21_AHR can be found at https://ls11-www.cs.tu-dortmund.de/staff/morris/graphkerneldatasets

RexYing avatar Jan 09 '20 13:01 RexYing

The REDDIT-BINARY/Mutagenicity/Tox21_AHR can be found at https://ls11-www.cs.tu-dortmund.de/staff/morris/graphkerneldatasets

Thanks for your response.But after downloading these datasets and retraining the models ,I still cannot find ckpt or pth.tar of REDDIT-BINARY/Mutagenicity/Tox21_AHR models.

>python explainer_main.py --bmname=REDDIT-BINARY --gpu


CUDA 0
loading model
ckpt\REDDIT-BINARY_base_h20_o20.pth.tar
Checkpoint does not exist!
Checked path -- ckpt\REDDIT-BINARY_base_h20_o20.pth.tar
Make sure you have provided the correct path!
You may have forgotten to train a model for this dataset.

To train one of the paper's models, run the following
>> python train.py --dataset=DATASET_NAME

Traceback (most recent call last):
  File "explainer_main.py", line 316, in <module>
    main()
  File "explainer_main.py", line 193, in main
    ckpt = io_utils.load_ckpt(prog_args)
  File "C:\Users\Administrator\Desktop\gnn-model-explainer\utils\io_utils.py", line 124, in load_ckpt
    raise Exception("File not found.")
Exception: File not found.

lcgsglance avatar Jan 16 '20 11:01 lcgsglance

Maybe you don’t train the model before explain it

Lianlii avatar Dec 03 '20 12:12 Lianlii

I'm having similar problems. When I try running "python train.py --dataset=ppi_essential" I get an error that the file hi-union-ppi.tsv does not exist. Where can I get this file?

mina19 avatar Oct 25 '21 15:10 mina19