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ReproNim
ReproMan (AKA NICEMAN, AKA ReproNim TRD3)
I feel like we had encountered/discussed it before, but search here returned nothing, so decided to record: `--dbg` just to get a full trace. ```shell $> niceman --dbg login sm...
Trying to use `niceman exec` on a debian jessie box, did `pip install -e .` which pulled in all kinds of goodness which I am not sure we actually need....
As my fiasco in #221 showed, not-traced "files" might not actually be files which anyhow (`lexists`) on the drive. Since we are now retracing also docker image names etc, I...
``` (reproman-sandbox) [f006rq8@x01 ds000003-qc]$ cat run.sh reproman run -r discovery \ --sub slurm --orc datalad-no-remote \ --jp "container=containers/bids-mriqc" --bp subj=02,13 --follow \ --input 'sourcedata/sub-{p[subj]}' \ --output . \ '{inputs}' ....
I don't have docker or boto installed, and I dont need them. `backend-parameters` shouldn't scare the user. ``` [f006rq8@x01 reproman]$ reproman backend-parameters Backend parameters for 'aws-condor' access_key_id: AWS access key...
No module named 'packaging ``` [f006rq8@x01 reproman]$ reproman --version Traceback (most recent call last): File "/dartfs-hpc/rc/home/8/f006rq8/conda/bin/reproman", line 8, in sys.exit(main()) File "/dartfs-hpc/rc/home/8/f006rq8/conda/lib/python3.10/site-packages/reproman/cmdline/main.py", line 222, in main parser = setup_parser() File...
Probably obvious, but hand-hold docs would be good.
## Summary When creating an ssh resource for Dartmouth's Discovery cluster, (which does not accept ssh-keys) there is no password parameter. However, the code looks like it is supposed to...
resource type strings not listed. reproman create docs should show available resource types (and backend parameters). The command `reproman backend-parameters` is fine, but it doesn't pass the "Principle of Least...
An initial local attempt was slowed down by WTF of https://github.com/ReproNim/containers/issues/23 Preprint which inspired the fmriprep workflow here is http://dx.doi.org/10.1101/694364 Edit: an example of prototypical use of reproman for mriqc...