reproman
reproman copied to clipboard
ENH: small tune ups to "jobs -s" output in case of missing external (datalad)
See individual commits. Now (original version) would show
$> reproman --dbg jobs -s
[status: N/A - needs datalad] 20200107-213600-f814 on smaug via condor$ '{inputs}' '{outputs}' participant --participan...
...
instead of immediately crashing with
$> reproman jobs -s
2020-05-25 20:18:57,108 [ERROR ] DataLad is required for orchestrator 'datalad-pair-run' is missing. [orchestrators.py:__init__:488] (MissingExternalDependency)
edit1: pushed fb4e2a680a37c1fe660948263d554df1019ea109 which would just catch all exceptions and issue warning while providing NA for the status
Codecov Report
Merging #516 into master will increase coverage by
0.11%
. The diff coverage is77.77%
.
@@ Coverage Diff @@
## master #516 +/- ##
==========================================
+ Coverage 89.47% 89.59% +0.11%
==========================================
Files 148 148
Lines 12290 12295 +5
==========================================
+ Hits 10997 11016 +19
+ Misses 1293 1279 -14
Impacted Files | Coverage Δ | |
---|---|---|
reproman/support/jobs/orchestrators.py | 91.84% <ø> (ø) |
|
reproman/interface/jobs.py | 97.14% <77.77%> (-1.86%) |
:arrow_down: |
...eproman/interface/tests/test_backend_parameters.py | 100.00% <0.00%> (+4.34%) |
:arrow_up: |
reproman/tests/skip.py | 97.75% <0.00%> (+4.49%) |
:arrow_up: |
reproman/distributions/tests/test_venv.py | 98.07% <0.00%> (+10.57%) |
:arrow_up: |
Continue to review full report at Codecov.
Legend - Click here to learn more
Δ = absolute <relative> (impact)
,ø = not affected
,? = missing data
Powered by Codecov. Last update b6528a1...fb4e2a6. Read the comment docs.