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Published 20 hours ago • verified publisher icon ReproNim

Additional check while going through accessions

Open yarikoptic opened this issue 2 years ago • 0 comments

If ses markers are found to be alpha and start at int(1) -- they are likely to be strictly +1 for each subsequent one, e.g.

# /inbox/DICOM/DATE/A003591 done  SID0XXX (sid001804) session=XX  !!! was converted into SID0XXX/ses-01
# /inbox/DICOM/DATE/A003597 done  SID0XXX (sid001804) session=02 
# /inbox/DICOM/DATE/A003603 done  SID0XXX (sid001804) session=03 
# /inbox/DICOM/DATE/A003615 done  SID0XXX (sid001804) session=04 
# /inbox/DICOM/DATE/A003649 done  SID0XXX (sid001804) session=XX  !!! was converted into SID0XXX/ses-05
# /inbox/DICOM/DATE/A003659 done  SID0XXX (sid001804) session=06 
# /inbox/DICOM/DATE/A003688 done  SID0XXX (sid001804) session=07 
# /inbox/DICOM/DATE/A003698 done  SID0XXX (sid001804) session=08 
# /inbox/DICOM/DATE/A003713 done  SID0XXX (sid001804) session=09 
# /inbox/DICOM/DATE/A003715 done  SID0XXX (sid001804) session=10 
# /inbox/DICOM/DATE/A003720 done  SID0XXX (sid001804) session=11 
# /inbox/DICOM/DATE/A003778 done  SID0XXX (sid001804) session=12 
# /inbox/DICOM/DATE/A003865 done  SID0XXX (sid001804) session=13 
# /inbox/DICOM/DATE/A003875 done  SID0XXX (sid001804) session=14 
# /inbox/DICOM/DATE/A003883 done  SID0XXX (sid001804) session=15 
# /inbox/DICOM/DATE/A003918 done  SID0XXX (sid001804) session=16 
# /inbox/DICOM/DATE/A003924 done  SID0XXX (sid001804) session=17 
# /inbox/DICOM/DATE/A003985 done  SID0XXX (sid001804) session=18 
# /inbox/DICOM/DATE/A004071 done  SID0XXX (sid001804) session=19 
# /inbox/DICOM/DATE/A004244 done  SID0XXX (sid001804) session=20 
# /inbox/DICOM/DATE/A004280 done  SID0XXX (sid001804) session=21 
# /inbox/DICOM/DATE/A004293 done  SID0XXX (sid001804) session=22 
# /inbox/DICOM/DATE/A004299 done  SID0XXX (sid001804) session=23 
# /inbox/DICOM/DATE/A004307 done  SID0XXX (sid001804) session=24 
# /inbox/DICOM/DATE/A004476 done  SID0XXX (sid001804) session=25 
# /inbox/DICOM/DATE/A004874 done  SID0XXX (sid001804) session=26 
# /inbox/DICOM/DATE/A004901 done  SID0XXX (sid001804) session=27 
# /inbox/DICOM/DATE/A005111 done  SID0XXX (sid001804) session=28 
# /inbox/DICOM/DATE/A005138 done  SID0XXX (sid001804) session=29 
heudiconv -c dcm2niix --bids -o /inbox/BIDS -g accession_number --anon-cmd '.heudiconv/anon-cmd' -f .heudiconv/heuristic.py -l Wager/Wager/1080_wasabi --files /inbox/DICOM/DATE/A005178 # SID0XXX (sid001804) session=30

so clearly 30 is correct one, and if it was

  • 31 -- some is missing!
  • 030 -- different formatting (ideally we check for consistency there)

yarikoptic avatar Oct 21 '22 16:10 yarikoptic