enabled mrview gui

[stebo85]

maybe also helpful for #338

[codecov[bot]]

Codecov Report

Merging #349 (ae17cf8) into master (9274e18) will decrease coverage by 0.30%. The diff coverage is n/a.

@@            Coverage Diff             @@
##           master     #349      +/-   ##
==========================================
- Coverage   75.26%   74.96%   -0.31%     
==========================================
  Files          33       33              
  Lines        1981     1981              
  Branches      251      251              
==========================================
- Hits         1491     1485       -6     
- Misses        383      389       +6     
  Partials      107      107              

Impacted Files	Coverage Δ
neurodocker/interfaces/tests/utils.py	59.09% <0.00%> (-6.82%)	:arrow_down:

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[kaczmarj]

thanks @stebo85 - i'll test this out

[stebo85]

I recently build a new image and these three lines [ ! -f /usr/bin/moc ] && ln -s /usr/bin/moc-qt5 /usr/bin/moc [ ! -f /usr/bin/qmake ] && ln -s /usr/bin/qmake-qt5 /usr/bin/qmake [ ! -f /usr/bin/rcc ] && ln -s /usr/bin/rcc-qt5 /usr/bin/rcc where necessary when I made this pull request, but don't seem to be necessary anymore.

[kaczmarj]

thanks @stebo85 - i will review this PR (and the other PRs!) soon. thank you so much for your contributions.

[civier]

@stebo85, the MRtrix singularity image from CVL works fine with graphics (even with Mesa software rendering, if I enforce OpenGL 3.3 through Env variables). However, I understand this specific CVL singularity image is not built using neurodocker. I wonder -- are the recipes for the CVL containers (non-neurodocker ones) available online somewhere? If not, do you have access to them and can share? They can be a good reference.

[stebo85]

Dear @civier , the MRtrix singularity image is built using neurodocker: https://github.com/NeuroDesk/caid/blob/master/mrtrix3/build.sh and hosted on dockerhub (https://hub.docker.com/orgs/vnmd/repositories) and my singularity container storage (curl -s -S -X GET https://swift.rc.nectar.org.au:8888/v1/AUTH_d6165cc7b52841659ce8644df1884d5e/singularityImages)

[satra]

let's update this once #370 is merged. would be great to get mrview in :)

[stebo85]

mrview GUI is added in neurodesk build of mrtrix container