Remy Liu

Analogous to https://numpy.org/doc/stable/reference/generated/numpy.loadtxt.html

https://github.com/pyg-team/pytorch_geometric/pull/4689

Use BioPlex download, process, redownload, reprocess, etc. Check file logger

A recent fix #155 takes care of the issue of being unable to handle (propagate attributes) multiple (large) ontology graphs (#128). It does so by [clearing up the lru_cache](https://github.com/krishnanlab/NetworkLearningEval/pull/155/commits/f6ea6b8811c0a542c9960ded1e5f680274864c95) after...

* [ ] src/NLEval/graph/sparse.py * [ ] src/NLEval/graph/ontology.py * [ ] src/NLEval/graph/base.py * [ ] src/NLEval/graph/featurevec.py * [ ] src/NLEval/model_trainer/base.py * [ ] src/NLEval/label/collection.py * [ ] src/NLEval/label/filters/negative_generator.py * [...

* [ ] src/NLEval/graph/sparse.py:1:1: D100 Missing docstring in public module * [ ] src/NLEval/graph/ontology.py:1:1: D100 Missing docstring in public module * [ ] src/NLEval/graph/base.py:1:1: D100 Missing docstring in public module...

see https://numpy.org/devdocs/reference/typing.html