Remy Liu

icon indicating a website link https://remylau.github.io/

icon company Carnegie Mellon University icon location Post-doc fellow in the Ray and Stephanie Lane Computational Biology Department at CMU

Results 84 issues of Remy Liu

Option to fall back to downloading from `latest` if `current` or the version provided is not available.

Archive more adata options

For example, HumanNet individual channels need to be archived (then the hardcoded `HumanNet_CC` and `HumanNet_FN` can be deprecated)

Remove obselete terms in ontologies (filtering)

Add option for `weighted` to be inferred (SparseGraph from npz, etc.)

Potentially issue when saving directed edge list (compact..)

https://github.com/krishnanlab/obnb/blob/2588bc4f17c47fef46bcd2bf589bb0e7f0849b4f/src/obnb/graph/sparse.py#L712

Combine `.get_y` and `.split`; consolidate supervised and gnn trainers regarding handling of negatives

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#408

Add progress bar to ``restrict_to_branch``

Make a `dense` mode for loading graph from CX

Add link to data source webpage, and to NDEx when appliacble

Implement `DGL` dataloader