MitoFinder

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I am trying to use the MitoFinder program to search for some mitochondrial genomes from my samples. I installed the program on macOS Ventura 13.6.7 with an Intel Core i5...

MaykonCris

Missing gene - blastn evalue rounded to 0.0

2

I am running mitofinder on assembled contigs to search for mtDNA/Genomes. However, I am missing CO1 from the output. I thought maybe I just didn't capture that mtGene. However, to...

crcardenas

Questions about the circularization check

1

Hi, Firstly, I want to thank you for this amazing tool! I've been using it consistently during my PhD, and it has been immensely helpful! I have a few questions...

Nautilus96

Cannot add a path to the input fastq

5

I am sorry to disturb you. I have successfully install mitofinder-1.4.2. When I add an exact path before the input fastq file in the command, I get an erro saying...

qifasong

Issue with Circularization Check for Large Mitogenomes in MitoFinder

1

Hi, I have assembled the mitogenomes of 8 Microctonus aethiopoides using Flye in meta mode on ONT data. The mitogenomes were extracted from the assembly using the GetOrganelle tool. According...

meeranhussain

Hi, everyone: I am running docker/singularity version of MitoHiFi with apptainer as: `apptainer run -C -B /home -B /project -B /scratch -W ${SLURM_TMPDIR} mitohifi.sif python3 /opt/MitoHiFi/src/mitohifi.py -c /home/velascoc/projects/def-strelkov/velascoc/HiFi/pggb/S16_OS00FE2B_DA230375_bc2089.p_ctg_prefixed.fa -f /home/velascoc/scratch/HiFi/MitoHiFi/P_brassicae_Mitochondrion_LS992577_1.fasta...

sandravelascoc