MitoFinder
MitoFinder copied to clipboard
RemiAllio
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
It would be nice to run MitoFinder under Python 3. This will enable to mix this nice pipeline with others in one environment.
Hi Remi, I used MitoFinder 1.4.1. (singularity) to annotate mitochondrial genes from UCE library assemblies. I then used the script create_tbl2asn_files.py to generate sqn files for NCBI submission. However, when...
Hello, I have been trying to assemble a full mitogenome with MitoFinder using megahit. I have been able to assemble a contig of ~16,500 bp, which should be quite close...
Hi Remi, I was wondering how mitochondrial-genomes specific is MitoFinder ? Do you think it would work on Wolbachia for instance ? To me it looks like it should, given...
Hi @RemiAllio, Congrats on this nice project. I wanted to create a [Bioconda package](https://bioconda.github.io/) for MitoFinder but found a few problems that prevent to use MitFinder in multi-user settings or...
Hi, Remi, I found some of my jobs have stuck in processing R2 reads when I do assembly using MitoFinder 1.4. To investigate whether it was because of Spades assembler...
Hey Remio, Congrats, this is a great pipeline! I would like to implement some steps of your MitoFinder in a pipeline of mine. If your intention is to have it...
Hi, what would be the step-by-step process for using the output file from Mitofinder in Phyluce? I've tried some script templates described in "Findings UCEs"; however, I haven't succeeded. I...
I installed Mitofinder and when I run "mitofinder -h" I get this error that says line 148 in the mitofinder file has an error in it: File "/home/metzgerm/mybiotools/MitoFinder/mitofinder", line 148...
