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Kinetics search for surface reactions
There are a couple things that I noted when @Tingchenlee and I trying to find the following reaction (it is in the Deutschmann_Ni library):
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first, if you put in CO2 as the only reactant, you only get gas phase reactions:
if you put in CO2 and [*] as the reactants, you still do not get the reaction I specified:
it is only when you specify O=C=[*] and O=[*] as REACTANTS that it gives you the right reaction:
there are 2 problems, I think, if it is not user error:
- There is no third reactant or product entry field so maybe we cannot specify the reactants for this reaction at all with the current layout. if there is a work around where we can include 3-reactant surface reactions that would be great.
- we are not seeing surface reactions when we search the gas phase species. maybe this is expected behavior as well, but I would think if my search is less specific I would see all reactions with CO2?
similar problems:
If we search
the reactions with charged N2O show
when you click the 4th reaction
the charged N2O shows
I think we should have a check box of whether to consider surface reactions if only gas phase species were given as reactants (doesn't address all of the issues above, though)
Thank everyone for the input. @jonwzheng, can we find a time in mid-Apr to discuss and try to solve those issues related to surface reactions.
Adding this here, another problem with surface kinetics search...
the second result of this search
leads to
UnboundLocalError: local variable 'reverse_kinetics' referenced before assignment
The same UnboundLocalError: local variable 'reverse_kinetics' referenced before assignment
error in this reaction
The reverse reaction search was ok (It belongs to
Surface_Adsorption_Single
family)