Ragnar Groot Koerkamp

> You just need to untar the pre-trained model, and specify the directory and prefix to -c option. Could you update the readme example to include this information? Just trying...

> With the first case, obviously it is not logical to set `min` and `max` length equal to each other. Hmm OK, that wasn't obvious to me. I would like...

I got it working after doing ``` conda install pip conda install cython pip install scikit-learn=0.22.1 ``` but like the linked issue I now get these depracation and incompatibility warnings:...

For completeness: As far as I'm aware (this is my first time using conda), I added the `bioconda` and `conda-forge` channels and then installed it, so that would mean this...

This issue/bug is still present: [code](https://github.com/snakemake/snakemake/blob/e1cbde5a378a29e3e7c7c16c73e08b35afa47a56/snakemake/benchmark.py#L17-L21). In my case, I'm benchmarking tools that take anywhere from 1 second to 10 minutes to run, typically around a minute. Memory usage tends...

If you're adding Edmonds-Karp, Dinic should probably also be added since it has better complexity. And maybe Push-Relabel as well, although for general purpose flow Dinic covers a lot already....

https://gitlab.com/gitlab-org/gitlab/-/issues/31263#note_215961096 That fixed it for me at the time: I just create slack formatted links directly in gitlab instead of having markdown links converted to slack links at a later...

Here's a page explaining a general regex for matching links in markdown: https://medium.com/@michael_perrin/match-markdown-links-with-advanced-regex-features-fc5f9f4122bc It uses the following for matching the `[..]` part: ``` (? # Text group, including square brackets...

Simply putting the following in `limit_setter` works, but we need to only pin test cases, not compilations. ``` # Pin everything to CPU 0 when only running 1 job in...

> The log factor in Myers' O(ND) paper actually comes from the least common ancestor data structure rather than the suffix tree. They write: > Second, a recent RAM-based algorithm...