RabbitTClust
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RabbitBio
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
Hi @XiaomingXu1995 First, I'd like to congratulate you for RabbitTClust. I spent weeks trying to find a clustering algorithm that worked in the scale I needed and RabbitTClust solved all...
In recent runs against the latest NCBI dataset of Listeria, we've observed large discrepancies between RabbitTClust and NCBI clustering results. Here're a few examples. 1. When distance threshold < 0.0003,...
is it possible to add a function to extract representative genomes/sequences from the fasta file?
Hello, I'm really appreciative of the newick format that you recently introduced! I think this is a bug in building the tree. As I'm working with the newick file, it...
I have install openmp,but an errors. ``` (masw_conda) bash>$ ./install.sh ++ cd RabbitSketch ++ mkdir -p build ++ cd build ++ cmake -DCXXAPI=ON -DCMAKE_INSTALL_PREFIX=. .. -- The C compiler identification...
The latest two versions, 2.2.0 and 2.2.1 work well so far. However, we encountered a misleading error with the '-i' option. If the input file is not found, it prints...
Is it possible for a future release to generate the Newick tree format? Thanks!
Curious if there is a way to perform a one-against-all comparison rather than all-against-all? For example, I have an assembly from X and want to compare it to a collection...
