Automate building of all internal databases

Open dkoslicki opened this issue 5 years ago • 13 comments

Maybe using snakemake, automate the building of all internal databases. Options should include --all, or --<specific database(s)>.

Dec 07 '20 18:12 dkoslicki

TODO: resurrect this issue and make sure the things that were implemented still work. Also to update to refresh databases rather than a fresh build

Aug 23 '21 19:08 finnagin

Still TODO to decrease the amount of manual intervention required to refresh databases. Adding @chunyuma and @amykglen as additional databases have since been created (eg. DTD)

Jun 05 '22 19:06 dkoslicki

6/22 AHM: as part of KG2/c, all databases are auto-built save for: NGD, COHD, DTD. NGD @amykglen's purview, COHD + DTD @chunyuma's

Jun 22 '22 21:06 dkoslicki

OK to close, @dkoslicki ?

Jun 19 '24 16:06 saramsey

Hard to say: it would be great to have the build of all databases automated, but that seems like a heavy lift.

Jun 19 '24 16:06 dkoslicki