RTX
RTX copied to clipboard
RTXteam
Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
there are a number of relatively small improvements that would go a long ways to making synonymizer (and kg2c) builds run smoother: - [x] get rid of synonymizer test build?...
**THE BRANCH FOR THIS ROLLOUT IS: `KG2.9.2c`** **THE ARAX-DATABASES.RTX.AI DIRECTORY FOR THIS ROLLOUT IS: `/home/rtxconfig/KG2.9.2`** #### Prerequisites ##### ssh access To complete this workflow, you will need `ssh` access to:...
Bumps [flask-cors](https://github.com/corydolphin/flask-cors) from 3.0.10 to 4.0.1. Release notes Sourced from flask-cors's releases. 4.0.1 What's Changed Fix Read the Docs builds by @kurtmckee in corydolphin/flask-cors#345 Update extension.py to clean request.path before...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
I got a report from the ARS folks: we have noticed that ARAX is returning null scores for some of their results. can you look into it? https://arax.ncats.io/?r=44def7dd-809e-48bd-a411-fc9ae0d8e55c  Messages...
**THE BRANCH FOR THIS ROLLOUT IS: `kg2.9.0c`** **THE ARAX-DATABASES.RTX.AI DIRECTORY FOR THIS ROLLOUT IS: `/home/rtxconfig/KG2.9.0`** **Instance used to create the build: `buildkg2c.rtx.ai`** #### Prerequisites ##### ssh access To complete this...
Please add your substantial commits since master was deployed to TEST on the date in the title by EDITING this post with a terse Changelog entry. - Updated example Python...
Apparently xDTD requires you create a message before using `infer(action=drug_treatment_graph_expansion)`, but doing so returns ``` ERROR: Unrecognized command create_envelope ``` for the input ``` create_envelope() infer(action=drug_treatment_graph_expansion,node_curie=MONDO:0007827) ``` It appears that...
Guthrie Price (UI Team) [1:26 PM](https://ncatstranslator.slack.com/archives/C03LX327RK8/p1710880011462479) [@Eric Deutsch (Expander Agent)](https://ncatstranslator.slack.com/team/UTHT6PYG5) just FYI it seems like the arax UI won’t work when the ARS is down in some environment even when...
I was assigned this issue by TAQA: https://github.com/NCATSTranslator/Feedback/issues/707 Apparently xDTD was trained with KG2-SemMedDB that asserts that Epoprostenol is used to treat rats. And there are lots of papers describing...
Is it possible to update the ARAX example notebooks? Unless I am doing this wrong.... [https://github.com/RTXteam/RTX/blob/master/code/ARAX/Examples/ARAX_Example1.ipynb](url) I get: ``` Executing query at https://arax.rtx.ai/api/rtx/v1/query Please wait... ERROR returned with status 404...
