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do not map any SemMedDB-derived edges to `biolink:subclass_of`

Open saramsey opened this issue 8 months ago • 1 comments

Thank you Mohsen Taheri for bringing this issue to my attention.m This is a small step toward a fix for #63.

saramsey avatar Apr 03 '25 17:04 saramsey

this fix slated for including in the KG2.10.3pre build.

saramsey avatar Apr 03 '25 17:04 saramsey

This is creating a validation issue:

 AssertionError: SEMMEDDB:ISA should map to {'biolink:subclass_of'} (exact)

(see https://github.com/RTXteam/RTX-KG2/actions/runs/15830086501/job/44620316255)

We will have to address this with the Biolink team in order to get a real fix.

ecwood avatar Jun 23 '25 16:06 ecwood

This seems to be fixed in KG2.10.3:

Image

Closing.

ecwood avatar Aug 20 '25 08:08 ecwood

thank, you, I am glad this is no longer an issue.

saramsey avatar Aug 31 '25 22:08 saramsey