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bed files and gff files do not contain the same URS's

Open blakesweeney opened this issue 8 years ago • 0 comments

There are several missing URS locations in the bed file for pombe that are present in the gff file for pombe. The logic for selecting xrefs to export differs between gff and bed which likely leads to this issue. The list is:

URS0000005144
URS00000060F2
URS000000FE72
URS0000011E76
URS00000261F6
URS0000038846
URS000003EB75
URS0000054A9B
URS0000076F67
URS000009AEE6
URS00000A90BD
URS00000B40CF
URS00000B84DA
URS00000CF76B
URS00000E1077
URS00000E4561
URS00000E510A
URS00000FEDF7
URS0000101C2D
URS000012A615
URS000012EC74
URS00001307EC
URS00001365FF
URS0000156566
URS000017B0BB
URS0000195202
URS000019D072
URS00001AD663
URS00001B646E
URS00001C9A9A
URS00001DCE29
URS00001DDDAC
URS00001E4F56
URS00001F74B7
URS0000201528
URS000021B058
URS000021C5AF
URS0000226DF4
URS00002281E8
URS000027C703
URS000028495D
URS0000288B95
URS00002901E8
URS00002B824F
URS00002BA4D5
URS00002C4932
URS00002E4B9E
URS0000303EED
URS000032496B
URS000033315C
URS0000336FB9
URS0000346F1D
URS0000360869
URS0000374944
URS000038D3D4
URS00003B0065
URS00003C6042
URS00003D2253
URS00003F73E3
URS00003FEBD5
URS000040774E
URS0000409C5E
URS00004B806D
URS00004DBE35
URS0000515126
URS0000519C3F
URS000052E18F
URS0000534341
URS000054AC33
URS000054E923
URS00005583D8
URS000057BE73
URS0000583FD9
URS00005D2A8E
URS00005E6A72
URS0000610030
URS0000613D63

blakesweeney avatar Feb 08 '17 14:02 blakesweeney