R2DT

Version 1.4 (2023)

See the R2DT documentation

The R2DT software automatically generates RNA secondary structure diagrams in consistent, reproducible and recongnisable layouts using a library of templates representing a wide range of RNAs.

Examples

The following example visualisations show LSU, SSU, and 5S rRNA, four tRNAs, two RNAse P, snoRNA, MoCo riboswitch, and U4 snRNA:

Getting started

R2DT can be used in a number of ways:

• Web application hosted by RNAcentral
• API powered by EMBL-EBI Web Services
• As a command line tool with Docker, Singularity, or in a bare metal installation

Citation

If you use R2DT in your work, please consider citing the following paper:

R2DT is a framework for predicting and visualising RNA secondary structure using templates Nature Communications