Fix definition of primitive matrix and clarify Hamilton matrix reference

[Nanakjoth]

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This PR fixes two minor issues referenced in #576:

1. Primitive matrix definition : Updated the condition to say $A^k$ is positive for some $k \in \mathbb{N}$, which is the correct definition of a primitive matrix.

2. Hamilton matrix: Replaced the misleading term "Hamilton matrix" with "Hamilton’s transition matrix (mc_eg2)" to avoid confusion with Hamiltonian matrices in physics.

I hope this fix was helpful, Happy to make any changes if needed — just let me know.

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[HumphreyYang]

Thanks @Nanakjoth for contribution! I just pushed some minor updates to the PR.

[mmcky]

thanks @Nanakjoth and @HumphreyYang

@Nanakjoth here is the documentation for the syntax on internal references for jupyter-book https://jupyterbook.org/en/stable/content/references.html.

[Nanakjoth]

Thanks for sharing the documentation, @mmcky! 📚, Now after the AI review, it looks Great. Please let me know if there’s anything else I can help with, I’m looking forward to seeing this merged😊.

[mmcky]

thanks so much @Nanakjoth and @HumphreyYang