buttery-eel
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add barcoding info to the sequencing summary when turned on
Here is an example of the file format of a seq sum file when bacoding is turned on in minknow
filename_fastq filename_fast5 filename_pod5 parent_read_id read_id run_id channel mux minknow_events start_time duration passes_filtering template_start num_events_template template_duration sequence_length_template mean_qscore_template strand_score_template median_template mad_template pore_type experiment_id sample_id end_reason alias type barcode_arrangement barcode_full_arrangement barcode_kit barcode_variant barcode_score barcode_front_id barcode_front_score barcode_front_refseq barcode_front_foundseq barcode_front_foundseq_length barcode_front_begin_index barcode_rear_id barcode_rear_score barcode_rear_refseq barcode_rear_foundseq barcode_rear_foundseq_length barcode_rear_end_index
PAW16103_fail_unclassified_438c8a51_ed9a488b_0.fastq.gz - PAW16103_438c8a51_ed9a488b_0.pod5 2d43c862-ad44-4609-88b8-86968a0b5c81 2d43c862-ad44-4609-88b8-86968a0b5c81 ed9a488bf2b7687b528a015d5a167792d03de949 246 1 799 16.865600 1.683800 FALSE 16.867600 1401 1.681800 1 1.000000 0.000000 -754.171814 0.007988 not_set PPTXXS240191 SAMPLE_pool1 signal_positive unclassified na unclassified LWB01_var1 LWB var1 -40.000000 BC01_FWD -40.000000 CCGTGACAAGAAAGTTGTCGGTGTCTTTGTGACTTGCCTGTCGCTCTATCTTC T 1 0 BC01_REV -40.000000 GCAATATCAGCACCAACAGAAACACAAAGACACCGACAACTTTCTTGTCACGG T 1 0
filename_fastq
filename_fast5
filename_pod5
parent_read_id
read_id
run_id
channel
mux
minknow_events
start_time
duration
passes_filtering
template_start
num_events_template
template_duration
sequence_length_template
mean_qscore_template
strand_score_template
median_template
mad_template
pore_type
experiment_id
sample_id
end_reason
alias
type
barcode_arrangement
barcode_full_arrangement
barcode_kit
barcode_variant
barcode_score
barcode_front_id
barcode_front_score
barcode_front_refseq
barcode_front_foundseq
barcode_front_foundseq_length
barcode_front_begin_index
barcode_rear_id
barcode_rear_score
barcode_rear_refseq
barcode_rear_foundseq
barcode_rear_foundseq_length
barcode_rear_end_index