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Gets all reads key error with dorado

Open kir1to455 opened this issue 1 year ago • 10 comments

Hi, I encountered an issue when using buttery-eel to baseclling with dorado-server. image I want to use Dorado to basecall the RNA methylation model. Here is my code: ` Slow5Dir="/public2/hjliang/ONT_data/slow5" GuppyDir="/home/hjliang/software/ont-dorado-server/bin" FastqDir="/public2/hjliang/ONT_data/fastq" ModDir="/public2/hjliang/ONT_data/modkit"

buttery-eel -g ${GuppyDir} --config rna_rp4_130bps_sup.cfg --device cuda:0 -i ${Slow5Dir}/PAQ17395_hac.pass.blow5 --call_mods -o ${ModDir}/PAQ17395_hac.pass.m6A.mod.sam -q 7 --slow5_threads 40 --procs 40 --port 5000 --use_tcp ` Here is the error I encountered: image

I appreciate it if you could take a look. Best wishes, Kirito

kir1to455 avatar Jan 04 '24 11:01 kir1to455