buttery-eel
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Gets all reads key error with dorado
Hi, I encountered an issue when using buttery-eel to baseclling with dorado-server.
I want to use Dorado to basecall the RNA methylation model.
Here is my code:
`
Slow5Dir="/public2/hjliang/ONT_data/slow5"
GuppyDir="/home/hjliang/software/ont-dorado-server/bin"
FastqDir="/public2/hjliang/ONT_data/fastq"
ModDir="/public2/hjliang/ONT_data/modkit"
buttery-eel -g ${GuppyDir} --config rna_rp4_130bps_sup.cfg --device cuda:0 -i ${Slow5Dir}/PAQ17395_hac.pass.blow5 --call_mods -o ${ModDir}/PAQ17395_hac.pass.m6A.mod.sam -q 7 --slow5_threads 40 --procs 40 --port 5000 --use_tcp
`
Here is the error I encountered:
I appreciate it if you could take a look. Best wishes, Kirito