model-zoo

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wholeBody_ct_segmentation model for DICOM input file

2

Hi, I was used wholeBody_ct_segmentation model to test custom clinical image. But the format file is NIFITI (.nii), how can I inference the model with DICOM file format. Is there...

ytl0623

Model weights should be stored to CPU for all bundles

2

To avoid issues when running bundles in CPU mode like that encountered below, all bundle weights should be stored on CPU. The alternative solution is to ensure any `CheckpointLoader` objects...

ericspod

multi-gpu tensorboard handlers initialization

2

https://github.com/Project-MONAI/model-zoo/blob/cf5e0322ee25b178b6cf841f3bd81e0a8adf2b16/models/spleen_ct_segmentation/configs/multi_gpu_train.json#L18 the multi-gpu override essentially set the trainer handlers to `$@train#handlers[:-2]` for the worker nodes. but because of the `@train#handlers` reference, the config parser will still trigger handler constructor calls...

wyli

TypeError when using lung_nodule_ct_detection

1

**Describe the bug** I have downloaded the lung_nodule_ct_detection bundle (0.5.9) and I try to follow the steps of https://docs.monai.io/projects/monai-deploy-app-sdk/en/latest/notebooks/tutorials/06_monai_bundle_app.html# to create a MAP using the downloaded bundle. Unfortunately, I fail...

fordanic

[WIP] Support generative bundles and pathology hovernet bundles with TensorRT

1

Support generative bundles and pathology hovernet bundles with TensorRT. ### Description A few sentences describing the changes proposed in this pull request. ### Status **Ready/Work in progress/Hold** ### Please ensure...

binliunls

MONAI Model Zoo Discussion - pathology_nuclei_segmentation_classification

1

Hi I am trying to use MONAI Model Zoo Discussion - pathology_nuclei_segmentation_classification model on QuPath with Monai Label extension. When I press Annotations button after completion of process I cannot...

SameerShanbhogue

Add depth map estimation bundle

8

Add depth map estimation bundle based on: https://github.com/SNRLab/Visually_Navigated_Bronchoscopy

franklinwk

**Is your feature request related to a problem? Please describe.** The current metadata format supports specific versions of dependencies: https://github.com/Project-MONAI/model-zoo/blob/ff6175a18bda80c2093cd6fb2a493055cccacf70/models/brats_mri_segmentation/configs/metadata.json#L28-L30 would be great to extend the syntax to have more...

wyli

Adding depth map estimation bundle. Some issues with creating inference.json. #411 ### Description Adding depth map estimation bundle. ### Status **Work in progress** ### Please ensure all the checkboxes: -...

franklinwk

Input image transforms for some of the models may be improved

1

**Is your feature request related to a problem? Please describe.** The input image transforms in some of the models may not be configured to offer optimal input to the model...

DrLex0