SlicerMONAIViz

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updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v6.0.0) - [github.com/pycqa/isort: 5.12.0 → 6.1.0](https://github.com/pycqa/isort/compare/5.12.0...6.1.0) - [github.com/pycqa/isort: 5.12.0 → 6.1.0](https://github.com/pycqa/isort/compare/5.12.0...6.1.0) - https://github.com/psf/black → https://github.com/psf/black-pre-commit-mirror - [github.com/psf/black-pre-commit-mirror: 23.9.1 → 25.9.0](https://github.com/psf/black-pre-commit-mirror/compare/23.9.1...25.9.0) - https://github.com/psf/black → https://github.com/psf/black-pre-commit-mirror -...

pre-commit-ci[bot]

monai import errors

1

After installing dependencies with `MONAIVizLogic.installMONAI()` and then importing monai, I am getting the following errors. ``` >>> import monai Traceback (most recent call last): File "/Applications/Slicer-5.4.0_stable.app/Contents/lib/Python/lib/python3.9/site-packages/monai/utils/module.py", line 210, in load_submodules...

che85

[Linux] cannot edit transform

3

I was able to install it on Linux, but when trying to edit transform, I am getting the following error:  ``` Selected Transform for Edit: 0 Traceback (most recent...

che85

transformation ``` train_transforms = Compose( [ LoadImaged(keys=["image", "label"]), EnsureChannelFirstd(keys=["image", "label"]), ScaleIntensityRanged( keys=["image"], a_min=-1024.0, a_max=1906.0, b_min=0.0, b_max=1.0, clip=True, ), Spacingd(keys=["image", "label"], pixdim=(1.5, 1.5, 2.0), mode=("bilinear", "nearest")), Orientationd(keys=["image", "label"], axcodes="RAS"), Resized(keys=["image", "label"],spatial_size...

Alisoltan82

monai UNET training error , diffreneces in tensor size

1

good day, tensor size for image , label checked from train dataloader just before the training ``` data = first(train_loader) data['image'][6].shape , data['label'][6].shape (torch.Size([1, 90, 90, 40]), torch.Size([1, 90, 90,...

Alisoltan82

Minor fixes for encoding and call of undefined methods

3

fixes #32 fixes #30

che85

After installing the extension and running it for the first time, `monai` python package is not installed. The following two methods do not exist: https://github.com/Project-MONAI/SlicerMONAIViz/blob/9dd9dc21aaef0bb44c233308ff843595dc0ffa9b/MONAIViz/MONAIViz.py#L842

che85

support modifying transform arguments in different class types

1

Hi, great tool so far! I am trying to apply a `Lambdad` function in my transform chain. For example, after `LoadImaged` I want to apply the transform: ```python Lambdad(keys=["image"], func=lambda...

nvahmadi

wyli

Since we will be releasing Slicer 5.4 this week, we could probably change this to `version 5.4 or higher` _Originally posted by @jcfr in https://github.com/Project-MONAI/SlicerMONAIViz/pull/23#discussion_r1295227453_

wyli