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(monailabel) huyao@vvm-XPS-8960:~$ monailabel start_server --app /home/huyao/apps/monaibundle --studies /home/huyao/data/Task08_HepaticVessel/imagesTr --conf models swin_unetr_btcv_segmentation Using PYTHONPATH=/home/huyao/anaconda3/envs:

[2024-05-08 10:13:55,639] [1657753] [MainThread] [INFO] (main:285) - USING:: version = False [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: app = /home/huyao/apps/monaibundle [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: studies = /home/huyao/data/Task08_HepaticVessel/imagesTr [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: verbose = INFO [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: conf = [['models', 'swin_unetr_btcv_segmentation']] [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: host = 0.0.0.0 [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: port = 8000 [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: uvicorn_app = monailabel.app:app [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_keyfile = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_certfile = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_keyfile_password = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_ca_certs = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: workers = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: limit_concurrency = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: access_log = False [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: root_path = / [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: log_level = info [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: log_config = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: dryrun = False [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: action = start_server [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:296) - Allow Origins: ['*'] [2024-05-08 10:13:55,853] [1657753] [MainThread] [INFO] (uvicorn.error:74) - Started server process [1657753] [2024-05-08 10:13:55,853] [1657753] [MainThread] [INFO] (uvicorn.error:48) - Waiting for application startup. [2024-05-08 10:13:55,853] [1657753] [MainThread] [INFO] (monailabel.interfaces.utils.app:37) - Initializing App from: /home/huyao/apps/monaibundle; studies: /home/huyao/data/Task08_HepaticVessel/imagesTr; conf: {'models': 'swin_unetr_btcv_segmentation'} [2024-05-08 10:13:55,861] [1657753] [MainThread] [INFO] (monailabel.utils.others.class_utils:57) - Subclass for MONAILabelApp Found: <class 'main.MyApp'>

---

Github access rate limit reached, please provide personal auth token by setting env MONAI_ZOO_AUTH_TOKEN or --conf auth_token [2024-05-08 10:13:55,882] [1657753] [MainThread] [ERROR] (uvicorn.error:123) - Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connection.py", line 174, in _new_conn conn = connection.create_connection( File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/util/connection.py", line 95, in create_connection raise err File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/util/connection.py", line 85, in create_connection sock.connect(sa) ConnectionRefusedError: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 715, in urlopen httplib_response = self._make_request( File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 404, in _make_request self._validate_conn(conn) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1058, in _validate_conn conn.connect() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connection.py", line 363, in connect self.sock = conn = self._new_conn() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connection.py", line 186, in _new_conn raise NewConnectionError( urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7ab4c2324100>: Failed to establish a new connection: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/adapters.py", line 489, in send resp = conn.urlopen( File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 799, in urlopen retries = retries.increment( File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/util/retry.py", line 592, in increment raise MaxRetryError(_pool, url, error or ResponseError(cause)) urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /Project-MONAI/model-zoo/dev/models/model_info.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ab4c2324100>: Failed to establish a new connection: [Errno 111] Connection refused'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/utils/others/generic.py", line 261, in get_zoo_bundle zoo_info = get_all_bundles_list(auth_token=auth_token) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monai/bundle/scripts.py", line 624, in get_all_bundles_list bundles_info = _get_all_bundles_info(repo=repo, tag=tag, auth_token=auth_token) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monai/bundle/scripts.py", line 568, in _get_all_bundles_info resp = requests_get(request_url) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/api.py", line 73, in get return request("get", url, params=params, **kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/api.py", line 59, in request return session.request(method=method, url=url, **kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/sessions.py", line 587, in request resp = self.send(prep, **send_kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/sessions.py", line 701, in send r = adapter.send(request, **kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/adapters.py", line 565, in send raise ConnectionError(e, request=request) requests.exceptions.ConnectionError: HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /Project-MONAI/model-zoo/dev/models/model_info.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ab4c2324100>: Failed to establish a new connection: [Errno 111] Connection refused'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/starlette/routing.py", line 677, in lifespan async with self.lifespan_context(app) as maybe_state: File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/starlette/routing.py", line 566, in aenter await self._router.startup() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/starlette/routing.py", line 654, in startup await handler() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/app.py", line 108, in startup_event instance = app_instance() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/interfaces/utils/app.py", line 50, in app_instance app = c(app_dir=app_dir, studies=studies, conf=conf) File "/home/huyao/apps/monaibundle/main.py", line 36, in init self.models = get_bundle_models(app_dir, conf) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/utils/others/generic.py", line 354, in get_bundle_models bundles = get_zoo_bundle(model_dir, conf, models, conf_key) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/utils/others/generic.py", line 269, in get_zoo_bundle exit(-1) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/_sitebuiltins.py", line 26, in call raise SystemExit(code) SystemExit: -1

[2024-05-08 10:13:55,882] [1657753] [MainThread] [ERROR] (uvicorn.error:59) - Application startup failed. Exiting.