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Integrating MICCAI Submissions into MONAI

61

A number of submissions to MICCAI 2024 were identified as interesting for inclusion in MONAI core. There are listed here for the consideration of the community and to solicit support...

ericspod

**Describe the bug** When running the brats_mri_axial_slices_generative_diffusion bundle on MONAI 1.5, inference fails with a weight mismatch error. The autoencoder or diffusion model cannot load the pretrained weights (KeyError for...

Neetong

The argument network_type is formatted wrongly in the PerceptualLoss docstrings, as shown in: https://docs.monai.io/en/stable/losses.html#perceptualloss.

virginiafdez

Test erros on PyTorch Release 25.08 on Series 50

3

**Describe the bug** Running `./runtests.sh -u -q --net --coverage` withing the (b5bc69d, dev, release 1.5.1) version of the repo. I am sharing the results of b5bc69d, I will be sending...

garciadias

**Is your feature request related to a problem? Please describe.** Auto3DSeg uses pickle for communicating between processes. This is safe security-wise but it might be better to not use pickle...

ericspod

Update Base Docker Image

1

**Is your feature request related to a problem? Please describe.** The Docker image should be updated to use a 25.08 as the base version. **Additional context** Further testing on Blossom...

ericspod

Frequent Hang Issue in test_vnet and test_ahnet during daily tests

1

``` [2025-09-20T21:06:34.990Z] Starting test: test_ahnet_shape_2d_0 (tests.networks.nets.test_ahnet.TestAHNET)... [2025-09-20T22:20:44.737Z] Sending interrupt signal to process [2025-09-20T22:20:44.737Z] Killing processes [2025-09-20T22:20:45.018Z] kill finished with exit code 0 [2025-09-20T22:20:58.768Z] script returned exit code 143 ``` ```...

KumoLiu

pkg_resources is deprecated as an API for python 3.13.5

1

When installing monai and importing in python 3.13.5, we get a deprecation warning: Python 3.13.5 (main, Jul 28 2025, 00:00:00) [GCC 11.5.0 20240719 (Red Hat 11.5.0-5)] on linux Type "help",...

mgraugal

Update Frequency Transform

11

Fixes #8520. ### Description This adds `torchaudio` as a dependency and changes `SignalRemoveFrequency` to explicitly convert input to double precision, this seems to be needed for new versions. ### Types...

ericspod

Possible RandCropByPosNegLabeld state corruption with persistent workers

1

I have 512x512 images/label pairs from which I extract 1 256x256 sample using `RandCropByPosNegLabeld`. In the first epoch, everything is fine: I get a few warnings because some of the...

aarpon