reproducible

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'crayon' superseded; use 'cli'

1

https://github.com/r-lib/crayon/commit/9b7f87e4ded2a6e1a76e682e44940bac233b5be4 > The crayon package is now superseded. Please use the 'cli' package for new projects. > crayon is still supported and will receive important bug fixes, but no new...

achubaty

inconsistent cache size reporting and management

1

I keep seeing inconsistencies in Cache behaviour, typically needing to invoke both `clearCache()` and `cc(Inf)` in order to fully remove all cache entries and files: ```r > reproducible::CacheStorageDir() [1] "cache/cacheOutputs"...

achubaty

consider exporting objects being used by `SpaDES.core`

1

`SpaDES.core` currently has: ```r extractFromCache

achubaty

this is useful for e.g., debugging cache problems, where we can check for cache etries or objects created with 'outdated' versions, and possibly provide better error messages to the user...

achubaty

`postProcess` operations not being cached when nested in `prepInputs` call?

4

I've noticed that my crop/mask/projection operations do not seem to be cached when running a `prepInputs` call: reprex: ``` Require::Require("PredictiveEcology/reproducible") options(reproducible.destinationPath = "~/reproducible_test/data", reproducible.cachePath = "~/reproducible_test/cache") shpUrl

CeresBarros

empty `lists` retrieved from cache as `SpatVectors`

7

Empty lists nested in another list are being retrieved as a SpatVector after caching: ``` Browse[2]> speciesGAMMs speciesGAMMs$Abie_Bal $speciesGamm named list() $originalData Empty data.table (0 rows and 7 cols): speciesTemp,MeasureYear,OrigPlotID1,PlotSize,standAge,biomass......

CeresBarros

caching/saving extremely slow -- problem capturing environments

6

attempting to run the module with latest SpaDES.core and reproducible. reprex to follow. @CeresBarros have you noticed issues caching/saving this module? ```r Sep28 10:39:55 Biomass_speciesData total elpsd: 2.4 mins |...

achubaty

`projectTo()` help file says argument `projectTo` should be created using `sf_crs()` but this fails because `terra` is expecting a character. Using a character fails because it looks like `projectTo()` passes...

achubaty

Message still shows after `reproducible.cachePath` option is set

1

This is my first time using reproducible and I am wondering why it took so long! I noticed that the message "No cachePath supplied and getOption('reproducible.cachePath') is inside a temporary...

see24

enforce code style via GitHub actions?

5

See for an action we can use to auto-style package code and commit the changes. I think it's worth implementing across our packages to 1) help my brain read/understand code...

achubaty