Stanislav Poslavsky

Multiple programming languages organized in tabs

9

I have a library which supports two programming languages (say Java and Scala). Is there any way to organize this in tabbed view with markup? Like here:

Caused by: java.lang.ClassCastException: class com.milaboratory.core.io.sequence.SingleReadImpl cannot be cast to class com.milaboratory.core.io.sequence.PairedRead (com.milaboratory.core.io.sequence.SingleReadImpl and com.milaboratory.core.io.sequence.PairedRead are in unnamed module of loader 'app') at com.milaboratory.mixcr.vdjaligners.VDJCAlignerWithMerge.process0(VDJCAlignerWithMerge.java:27) at com.milaboratory.mixcr.vdjaligners.VDJCAligner.process(VDJCAligner.java:75) at com.milaboratory.mixcr.vdjaligners.VDJCAligner.process(VDJCAligner.java:31) at com.milaboratory.mixcr.cli.CommandAlign$run0$1$1$1$alignedChunks$1.invoke(CommandAlign.kt:797) at...

Extracting useful reads

2

Hi, Is there way to extract reads that were successfully assembled by vdjer from the original bam file? I mean the following. I supposed that `vdjer.sam` contains reads that were...

E.g. ``` mixcr exportAlignmentsPretty --filter-barcode cell TCGATC ... ```