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Sparse representation of genotype posterior

Open timothymillar opened this issue 2 months ago • 1 comments

Investigate a sparse encoding of genotype posteriors. E.g. an equivalent to the PP field (phred-scaled probabilities) in which zeoro values are omitted. This can be represented as a map of genotype index to non-zero phred scaled probabilities. This effectively removes genotypes with probabilities <= 0.1. An example may look like "0=10,2=3,7=1" and have the String type in VCF.

timothymillar avatar Apr 09 '24 01:04 timothymillar