MCHap
MCHap copied to clipboard
Sparse representation of genotype posterior
Investigate a sparse encoding of genotype posteriors. E.g. an equivalent to the PP
field (phred-scaled probabilities) in which zeoro values are omitted. This can be represented as a map of genotype index to non-zero phred scaled probabilities. This effectively removes genotypes with probabilities <= 0.1. An example may look like "0=10,2=3,7=1"
and have the String type in VCF.