Citation tools for reconstruction?

[pierre-nedelec]

QSIprep includes boilerplate language for citation purposes. However, it seems it does not include the reconstruction respective pipelines citation/description. For example, running the pyafq_tractometry pipeline and only got the following at the top of the log file:

Log details

Reconstruction was
performed using *QSIprep* 0.19.0,
which is based on *Nipype* 1.8.6
(@nipype1; @nipype2; RRID:SCR_002502).

QSIPrep-preprocessed T1w images and brain masks were used. 

Many internal operations of *qsiprep* use
*Nilearn* 0.10.1 [@nilearn, RRID:SCR_001362] and
*Dipy* 1.5.0[@dipy].
For more details of the pipeline, see [the section corresponding
to workflows in *qsiprep*'s documentation](https://qsiprep.readthedocs.io/en/latest/workflows.html "qsiprep's documentation").


### References

    
IMPORTANT:nipype.workflow:Works derived from this qsiprep execution should include the following boilerplate:


Reconstruction was
performed using *QSIprep* 0.19.0,
which is based on *Nipype* 1.8.6
(@nipype1; @nipype2; RRID:SCR_002502).

QSIPrep-preprocessed T1w images and brain masks were used. 

Many internal operations of *qsiprep* use
*Nilearn* 0.10.1 [@nilearn, RRID:SCR_001362] and
*Dipy* 1.5.0[@dipy].
For more details of the pipeline, see [the section corresponding
to workflows in *qsiprep*'s documentation](https://qsiprep.readthedocs.io/en/latest/workflows.html "qsiprep's documentation").


### References

    
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata.
  Falling back to 'CITATION'

Or is it on the specific pipeline developer to add something of their own? @mattcieslak @36000

[mattcieslak]

The boilerplate gets generated in the workflow-building functions. For example, the mrtrix workflows are full of citations like here.

PyAFQ could definitely use some citation boilerplate