Error loading yml plugin using 0.16.ORc3

[WilliamFCB]

Hi Matt, I started trying out 0.16.ORC3

The script apparently halted already when it tried to load a ..qsiprep_plugin.yml file

Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap self.run() File "/usr/local/miniconda/lib/python3.8/multiprocessing/process.py", line 108, in run self._target(*self._args, **self._kwargs) File "/usr/local/miniconda/lib/python3.8/site-packages/qsiprep/cli/run.py", line 851, in build_qsiprep_workflow plugin_settings = loadyml(f) TypeError: load() missing 1 required positional argument: 'Loader'

A quick and dirty web search suggested that this might be solved by using yaml.safe_load(f) instead of yaml.load(f)

thanks William

[mattcieslak]

@WilliamFCB could you try pennbbl/qsiprep:unstable? This has the fix you proposed and should solve this issue

[WilliamFCB]

Hi Matt,

Many thanks, I will give it a go!

[mattcieslak]

Closing for now, please reopen if it's not resolved