Exception raised while executing Node concat

[BNU-liuzhenzhao]

@mattcieslak Hi, I am sorry for trubbling you again for a few problems. The qsiprep pipeline crashed and throwed error: `220228-06:04:19,44 nipype.workflow WARNING: [Node] Error on "qsiprep_wf.single_subject_6148668_wf.dwi_preproc_wf.confounds_wf.concat" (/work/qsiprep_wf/single_subject_6148668_wf/dwi_preproc_wf/confounds_wf/concat) 220228-06:04:19,44 nipype.workflow ERROR: Node concat failed to run on host 1d625f18f2d1. 220228-06:04:19,49 nipype.workflow ERROR: Saving crash info to /out/qsiprep/sub-6148668/log/20220228-032215_da33df6a-cf8f-4ba1-ae19-357e3c5427d6/crash-20220228-060419-root-concat-bc7f3319-9b71-4336-a5ba-c87a66969554.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 344, in _send_procs_to_workers self.procs[jobid].run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command raise NodeExecutionError( nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node concat.

Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 398, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.8/site-packages/qsiprep/interfaces/confounds.py", line 53, in _run_interface combined_out, confounds_list = _gather_confounds( File "/usr/local/miniconda/lib/python3.8/site-packages/qsiprep/interfaces/confounds.py", line 174, in _gather_confounds raise Exception("Original files don't match. File a bug report!") Exception: Original files don't match. File a bug report!`

My command is: docker run -ti --rm --gpus all \ -v /home/shulab/data2/liuzhenzhao/qsiprep/qsiprep-in/HCP-A:/data:ro \ -v /home/shulab/data2/liuzhenzhao/qsiprep/qsiprep-out:/out \ -v /home//shulab/data2/liuzhenzhao/qsiprep/qsiprep-work:/work \ -v /home/shulab/data2/liuzhenzhao/qsiprep/qsiprep-conf:/qsiconfig \ pennbbl/qsiprep:unstable \ /data /out participant \ --participant_label [ '6148668' ] \ --output-resolution 1.5 \ --skip_bids_validation \ --eddy-config /qsiconfig/eddy_config.json \ --fs-license-file /qsiconfig/license.txt \ --recon_spec /qsiconfig/mrtrix_msmt_csd.json \ --recon-input /out \ --work_dir /work \ --unringing-method mrdegibbs \ --b0-to-t1w-transform Affine \ --distortion-group-merge average \ --nthreads 12 \ --low-mem My docker image is pennbbl/qsiprep:unstable.

what's wrong with it?

[mattcieslak]

This suggests that you didn't collect two of the exact same dwi schemes in different phase encoding directions. If that's the case you should remove --distortion-group-merge average.