CuBIDS

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scovitz

Entities in `CuBIDS.change_filename` are not comprehensive/up-to-date

4

I was running `cubids-apply` on a dataset with complex-valued, multi-echo BOLD data, and it looks like `CuBIDS.change_filename` is not aware of certain entities, because those entities are not hardcoded into...

tsalo

I'm not sure if array-type metadata fields (e.g., `PostLabelingDelay`) are currently implicitly supported, but it appears that CuBIDS currently tried to extract scalar info from array-type fields (e.g., `NSliceTiming` from...

tsalo

We should switch to importlib.resources.

tsalo

In addition to `IntendedFor`, which CuBIDS does cover, BIDS has `B0Fieldentifier` and `B0FieldSource` (and potentially other `bids:uri` or path-format fields pointing to files in the dataset) that it doesn't modify....

tsalo

look into ancp bids

4

See how their layout compares, maybe run some speed tests on datalad-enabled bids datasets

mattcieslak

Add option to anonymize acquisition datetimes in scans.tsv

1

Following a discussion in today's informatics scrum, I was thinking that it would be nice to be able to anonymize acquisition datetimes in the scans.tsv files (and potentially in sidecar...

tsalo

I have made a typo in `cubds` so in effect `codespell` was not in effect.

yarikoptic

scovitz

allow CuBIDS to concatenate subjects together from separate directories to be able to run with data on the S3

6

Use case example: pull subject directory into a temp directory run cubids-validate, cubids-group on that subject, do this with all subjects in an S3 bucket, and concatenate them into one...

audreymhoughton