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Published 20 hours ago • verified publisher icon PengNi

pod5/slow5 support

Open PengNi opened this issue 2 years ago • 1 comments

pod5: https://github.com/nanoporetech/pod5-file-format slow5: https://github.com/hasindu2008/slow5lib

use tombo api to resquiggle (#5).

PengNi avatar May 21 '22 06:05 PengNi

Dear Dr Peng, I was wondering if you are considering updating your deepsignal-plant pipeline with the new compressed pod5 format? Including the resquiggle step. That would be extremely useful because my fast5 files are very large. Thank you for your help. Best wishes

AlineMuyle avatar Jan 31 '23 15:01 AlineMuyle

move to deepsignal3.

PengNi avatar Apr 25 '24 11:04 PengNi