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mantis setup issue

Open AAwan2 opened this issue 2 years ago • 1 comments

Hi,

I installed mantis using conda install which went fine: conda create -p /tools/Miniconda3/envs/mantis_annotate -c conda-forge -c bioconda mantis_pfa

However, when I run: mantis setup

I get the following error: Traceback (most recent call last): File "/tools/Miniconda3/envs/mantis_annotate/bin/mantis", line 7, in from mantis.main import main File "/tools/Miniconda3/envs/mantis_annotate/lib/python3.10/site-packages/mantis/main.py", line 7, in from mantis.mantis import run_mantis, run_mantis_test, print_citation_mantis, print_version File "/tools/Miniconda3/envs/mantis_annotate/lib/python3.10/site-packages/mantis/mantis.py", line 110, in class MANTIS(Multiprocessing): NameError: name 'Multiprocessing' is not defined

I am unsure what the issue is here and would appreciate some help! Thank you!

AAwan2 avatar Jul 26 '23 17:07 AAwan2

I'm having the same problem. Cloning into '/data/home/luningyuan/anaconda3/lib/python3.11/site-packages/Resources/UniFunc'... fatal: unable to access 'https://github.com/PedroMTQ/UniFunc.git/': Empty reply from server Traceback (most recent call last): File "/data/home/luningyuan/anaconda3/bin/mantis", line 7, in from mantis.main import main File "/data/home/luningyuan/anaconda3/lib/python3.11/site-packages/mantis/main.py", line 7, in from mantis.mantis import run_mantis, run_mantis_test, print_citation_mantis, print_version File "/data/home/luningyuan/anaconda3/lib/python3.11/site-packages/mantis/mantis.py", line 110, in class MANTIS(Multiprocessing): ^^^^^^^^^^^^^^^ NameError: name 'Multiprocessing' is not defined

ningyuanlu avatar Jul 03 '24 11:07 ningyuanlu