Gemma
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allow backfilling of counts and rpkm without triggering preprocessing
To address curation issue 362.
By using the the noLog2cpm option for RNASeqDataAddCli should allow us to backfill counts and rpkm for old data sets in a minimally-invasive way.
Needs testing.
TODO
- [x] unit test for the CLI tool and argument parsing
- [x] unit test for skipping log2cpm recomputation and post-processing
- [ ] test case when library size differs
Ideally we would just compare the log2cpm with the new one and trigger post-processing if they differ.
I'll write some unit tests for the CLI.
I'll write unit tests instead of adding an integration test because it's impractical to check if the preprocessing service has been interacted with.