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Published 20 hours ago • verified publisher icon PaulingLiu

Query data format

Open levinhein opened this issue 4 years ago • 1 comments

Hi. Scibet's input data format is: Rows= cells and columns= genes. My data is Seurat object which is the opposite, Columns=cells and Rows=genes. May I ask if you know how to transform my data into Scibet-acceptable input? Thank you!

levinhein avatar Oct 07 '20 12:10 levinhein

I use t(as.data.frame(train@assays$RNA@data)) to transform the data, and want to know if there is other method to do?

caiquanyou avatar Jan 14 '21 08:01 caiquanyou