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Could I use rogue for seurat_clusters and orig.ident ?

Open ZhengJIN94 opened this issue 2 years ago • 0 comments

Hello,

I have a Smart-seq2 scRNA-seq dataset with multiple samples. However, I just hope to check whether the resolution parameter is suitable or not for the whole dataset rather than each sample. So I use orig.ident (all are same) in "samples" parameter. I use rogue as follow: rogue(seurat@assays$RNA@data, labels = seurat$seurat_clusters, samples = seurat$orig.ident, platform = "full-length", span = 0.5)

Is it correct ?

ZhengJIN94 avatar Apr 13 '22 03:04 ZhengJIN94