TransPi
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KEGG warn message
Thanks for providing this nice pipeline! I run an analysis with the following command: ./nextflow run TransPi.nf --all --maxReadLen 143 --k 25,35,55,75,85 --reads '/media/server2/Data_2Gb/Melongena/Data/Trimmed/Trimmed/provaR673_HP/R673HP831val_R[1,2].fastq.gz' --outdir /media/server2/Data_2Gb/Melongena/TransPi_R673_HP8 -profile docker --skipQC
Everthing was ok, except that the pipeline ended with a KEGG warning message:
"WARN: Access to undefined parameter skipKegg
-- Initialise it to a default value eg. params.skipKegg = some_value
"
annotation.
Indedd in the trinotate folder the KEGG report file is empty as well as the kegg section in the html.
Any suggestion for that issue?
Thank you in advance